J3_8BF7_027
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BF7_027 not in the Motif Atlas
- Geometric match to J3_4LFB_010
- Geometric discrepancy: 0.1427
- The information below is about J3_4LFB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8BF7|1|2|G|46
8BF7|1|2|C|47
*
8BF7|1|2|G|361
8BF7|1|2|G|362
8BF7|1|2|A|363
8BF7|1|2|A|364
8BF7|1|2|U|365
8BF7|1|2|A|366
8BF7|1|2|U|367
*
8BF7|1|2|A|393
8BF7|1|2|G|394
8BF7|1|2|C|395
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain p
- 30S ribosomal protein S12
- Chain t
- 30S ribosomal protein S16
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