J3_8BF7_035

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUU*AUGAAGUCG

Length

27 nucleotides

Bulged bases

8BF7|1|2|U|1240, 8BF7|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BF7|1|2|C|1237
8BF7|1|2|A|1238
8BF7|1|2|A|1239
8BF7|1|2|U|1240
8BF7|1|2|G|1241
*
8BF7|1|2|C|1296
8BF7|1|2|G|1297
8BF7|1|2|U|1298
8BF7|1|2|A|1299
8BF7|1|2|G|1300
8BF7|1|2|U|1301
8BF7|1|2|C|1302
8BF7|1|2|C|1303
8BF7|1|2|G|1304
8BF7|1|2|G|1305
8BF7|1|2|A|1306
8BF7|1|2|U|1307
8BF7|1|2|U|1308
*
8BF7|1|2|A|1329
8BF7|1|2|U|1330
8BF7|1|2|G|1331
8BF7|1|2|A|1332
8BF7|1|2|A|1333
8BF7|1|2|G|1334
8BF7|1|2|U|1335
8BF7|1|2|C|1336
8BF7|1|2|G|1337

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13