3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
8BF7|1|0|U|2334, 8BF7|1|0|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BF7_036 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1811
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

8BF7|1|0|C|2295
8BF7|1|0|U|2296
8BF7|1|0|A|2297
8BF7|1|0|A|2298
8BF7|1|0|U|2299
*
8BF7|1|0|A|2317
8BF7|1|0|G|2318
8BF7|1|0|G|2319
8BF7|1|0|U|2320
8BF7|1|0|U|2321
8BF7|1|0|A|2322
8BF7|1|0|G|2323
*
8BF7|1|0|C|2332
8BF7|1|0|A|2333
8BF7|1|0|U|2334
8BF7|1|0|A|2335
8BF7|1|0|A|2336
8BF7|1|0|G|2337

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 1
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L5
Chain L
50S ribosomal protein L18
Chain T
50S ribosomal protein L27

Coloring options:


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