J3_8BGE_001

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8BGE|1|0|U|686, 8BGE|1|0|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BGE_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1016

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8BGE|1|0|U|683
8BGE|1|0|G|684
8BGE|1|0|A|685
8BGE|1|0|U|686
8BGE|1|0|C|687
8BGE|1|0|U|688
8BGE|1|0|A|689
*
8BGE|1|0|U|773
8BGE|1|0|G|774
8BGE|1|0|G|775
*
8BGE|1|0|C|791
8BGE|1|0|A|792
8BGE|1|0|A|793
8BGE|1|0|A|794

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain c

50S ribosomal protein L34