J3_8BGE_021

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BGE_021 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1716

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8BGE|1|0|U|1344
8BGE|1|0|C|1345
8BGE|1|0|G|1346
8BGE|1|0|A|1347
8BGE|1|0|C|1348
8BGE|1|0|C|1349
*
8BGE|1|0|G|1382
8BGE|1|0|A|1383
8BGE|1|0|A|1384
8BGE|1|0|A|1385
*
8BGE|1|0|U|1402
8BGE|1|0|A|1403

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains