J3_8BGE_036

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUU*AUGAAGUCG

Length

27 nucleotides

Bulged bases

8BGE|1|2|U|1240, 8BGE|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BGE|1|2|C|1237
8BGE|1|2|A|1238
8BGE|1|2|A|1239
8BGE|1|2|U|1240
8BGE|1|2|G|1241
*
8BGE|1|2|C|1296
8BGE|1|2|G|1297
8BGE|1|2|U|1298
8BGE|1|2|A|1299
8BGE|1|2|G|1300
8BGE|1|2|U|1301
8BGE|1|2|C|1302
8BGE|1|2|C|1303
8BGE|1|2|G|1304
8BGE|1|2|G|1305
8BGE|1|2|A|1306
8BGE|1|2|U|1307
8BGE|1|2|U|1308
*
8BGE|1|2|A|1329
8BGE|1|2|U|1330
8BGE|1|2|G|1331
8BGE|1|2|A|1332
8BGE|1|2|A|1333
8BGE|1|2|G|1334
8BGE|1|2|U|1335
8BGE|1|2|C|1336
8BGE|1|2|G|1337

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13