J3_8BGH_007

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8BGH|1|0|A|2518, 8BGH|1|0|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BGH_007 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1798

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8BGH|1|0|C|2517
8BGH|1|0|A|2518
8BGH|1|0|U|2519
8BGH|1|0|C|2520
*
8BGH|1|0|G|2545
8BGH|1|0|U|2546
8BGH|1|0|A|2547
*
8BGH|1|0|U|2561
8BGH|1|0|U|2562
8BGH|1|0|U|2563
8BGH|1|0|A|2564
8BGH|1|0|A|2565
8BGH|1|0|A|2566
8BGH|1|0|G|2567

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain H

50S ribosomal protein L14