J3_8BGH_032

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUCUUGACAU*ACAG*CUUACGAC

Length

22 nucleotides

Bulged bases

8BGH|1|2|U|1212, 8BGH|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BGH|1|2|G|988
8BGH|1|2|U|989
8BGH|1|2|C|990
8BGH|1|2|U|991
8BGH|1|2|U|992
8BGH|1|2|G|993
8BGH|1|2|A|994
8BGH|1|2|C|995
8BGH|1|2|A|996
8BGH|1|2|U|997
*
8BGH|1|2|A|1044
8BGH|1|2|C|1045
8BGH|1|2|A|1046
8BGH|1|2|G|1047
*
8BGH|1|2|C|1210
8BGH|1|2|U|1211
8BGH|1|2|U|1212
8BGH|1|2|A|1213
8BGH|1|2|C|1214
8BGH|1|2|G|1215
8BGH|1|2|A|1216
8BGH|1|2|C|1217

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain r

30S ribosomal protein S14

Chain w

30S ribosomal protein S19