J3_8BGH_035

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUU*AUGAAGUCG

Length

27 nucleotides

Bulged bases

8BGH|1|2|U|1240, 8BGH|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BGH|1|2|C|1237
8BGH|1|2|A|1238
8BGH|1|2|A|1239
8BGH|1|2|U|1240
8BGH|1|2|G|1241
*
8BGH|1|2|C|1296
8BGH|1|2|G|1297
8BGH|1|2|U|1298
8BGH|1|2|A|1299
8BGH|1|2|G|1300
8BGH|1|2|U|1301
8BGH|1|2|C|1302
8BGH|1|2|C|1303
8BGH|1|2|G|1304
8BGH|1|2|G|1305
8BGH|1|2|A|1306
8BGH|1|2|U|1307
8BGH|1|2|U|1308
*
8BGH|1|2|A|1329
8BGH|1|2|U|1330
8BGH|1|2|G|1331
8BGH|1|2|A|1332
8BGH|1|2|A|1333
8BGH|1|2|G|1334
8BGH|1|2|U|1335
8BGH|1|2|C|1336
8BGH|1|2|G|1337

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13