3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
8BH4|1|0|C|1607, 8BH4|1|0|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BH4_004 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.1932
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

8BH4|1|0|C|1306
8BH4|1|0|A|1307
8BH4|1|0|A|1308
8BH4|1|0|G|1309
*
8BH4|1|0|C|1605
8BH4|1|0|C|1606
8BH4|1|0|C|1607
8BH4|1|0|A|1608
8BH4|1|0|A|1609
8BH4|1|0|A|1610
8BH4|1|0|C|1611
*
8BH4|1|0|G|1620
8BH4|1|0|U|1621
8BH4|1|0|G|1622

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain c
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1062 s
Application loaded.