J3_8BH4_007

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8BH4|1|0|A|2518, 8BH4|1|0|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BH4_007 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1776

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8BH4|1|0|C|2517
8BH4|1|0|A|2518
8BH4|1|0|U|2519
8BH4|1|0|C|2520
*
8BH4|1|0|G|2545
8BH4|1|0|U|2546
8BH4|1|0|A|2547
*
8BH4|1|0|U|2561
8BH4|1|0|U|2562
8BH4|1|0|U|2563
8BH4|1|0|A|2564
8BH4|1|0|A|2565
8BH4|1|0|A|2566
8BH4|1|0|G|2567

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain H

50S ribosomal protein L14