J3_8BH4_011

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUGGA*UAC*GGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|2|G|942
8BH4|1|2|U|943
8BH4|1|2|G|944
8BH4|1|2|G|945
8BH4|1|2|A|946
*
8BH4|1|2|U|1235
8BH4|1|2|A|1236
8BH4|1|2|C|1237
*
8BH4|1|2|G|1337
8BH4|1|2|G|1338
8BH4|1|2|A|1339
8BH4|1|2|A|1340
8BH4|1|2|U|1341

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain k

30S ribosomal protein S7

Chain m

30S ribosomal protein S9

Chain q

30S ribosomal protein S13