J3_8BH4_012

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUUUAAUUC*GAAGAACCUUAC*GGCUAC

Length

27 nucleotides

Bulged bases

8BH4|1|2|A|975, 8BH4|1|2|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|2|G|954
8BH4|1|2|U|955
8BH4|1|2|U|956
8BH4|1|2|U|957
8BH4|1|2|A|958
8BH4|1|2|A|959
8BH4|1|2|U|960
8BH4|1|2|U|961
8BH4|1|2|C|962
*
8BH4|1|2|G|973
8BH4|1|2|A|974
8BH4|1|2|A|975
8BH4|1|2|G|976
8BH4|1|2|A|977
8BH4|1|2|A|978
8BH4|1|2|C|979
8BH4|1|2|C|980
8BH4|1|2|U|981
8BH4|1|2|U|982
8BH4|1|2|A|983
8BH4|1|2|C|984
*
8BH4|1|2|G|1221
8BH4|1|2|G|1222
8BH4|1|2|C|1223
8BH4|1|2|U|1224
8BH4|1|2|A|1225
8BH4|1|2|C|1226

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

30S ribosomal protein S10

Chain q

30S ribosomal protein S13

Chain r

30S ribosomal protein S14

Chain w

30S ribosomal protein S19