3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
8BH4|1|0|U|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BH4_020 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.0997
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8BH4|1|0|G|297
8BH4|1|0|G|298
8BH4|1|0|A|299
8BH4|1|0|A|300
8BH4|1|0|G|301
*
8BH4|1|0|C|316
8BH4|1|0|G|317
8BH4|1|0|C|318
8BH4|1|0|G|319
8BH4|1|0|A|320
8BH4|1|0|U|321
8BH4|1|0|A|322
8BH4|1|0|C|323
8BH4|1|0|A|324
8BH4|1|0|G|325
*
8BH4|1|0|C|337
8BH4|1|0|G|338
8BH4|1|0|U|339
8BH4|1|0|A|340
8BH4|1|0|C|341

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain R
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0826 s
Application loaded.