J3_8BH4_024

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUAAUC*GAGGUUAG*CAUAAG

Length

20 nucleotides

Bulged bases

8BH4|1|0|U|2334, 8BH4|1|0|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|0|C|2295
8BH4|1|0|U|2296
8BH4|1|0|A|2297
8BH4|1|0|A|2298
8BH4|1|0|U|2299
8BH4|1|0|C|2300
*
8BH4|1|0|G|2316
8BH4|1|0|A|2317
8BH4|1|0|G|2318
8BH4|1|0|G|2319
8BH4|1|0|U|2320
8BH4|1|0|U|2321
8BH4|1|0|A|2322
8BH4|1|0|G|2323
*
8BH4|1|0|C|2332
8BH4|1|0|A|2333
8BH4|1|0|U|2334
8BH4|1|0|A|2335
8BH4|1|0|A|2336
8BH4|1|0|G|2337

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain T

50S ribosomal protein L27