J3_8BH4_034

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BH4_034 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1821

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BH4|1|2|U|1073
8BH4|1|2|G|1074
*
8BH4|1|2|U|1083
8BH4|1|2|G|1084
8BH4|1|2|U|1085
8BH4|1|2|U|1086
8BH4|1|2|G|1087
*
8BH4|1|2|C|1098
8BH4|1|2|G|1099
8BH4|1|2|C|1100
8BH4|1|2|A|1101
8BH4|1|2|A|1102

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain i

30S ribosomal protein S5

Chain y

30S ribosomal protein S21