J3_8BH4_035

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUU*AUGAAGUCG

Length

27 nucleotides

Bulged bases

8BH4|1|2|U|1240, 8BH4|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|2|C|1237
8BH4|1|2|A|1238
8BH4|1|2|A|1239
8BH4|1|2|U|1240
8BH4|1|2|G|1241
*
8BH4|1|2|C|1296
8BH4|1|2|G|1297
8BH4|1|2|U|1298
8BH4|1|2|A|1299
8BH4|1|2|G|1300
8BH4|1|2|U|1301
8BH4|1|2|C|1302
8BH4|1|2|C|1303
8BH4|1|2|G|1304
8BH4|1|2|G|1305
8BH4|1|2|A|1306
8BH4|1|2|U|1307
8BH4|1|2|U|1308
*
8BH4|1|2|A|1329
8BH4|1|2|U|1330
8BH4|1|2|G|1331
8BH4|1|2|A|1332
8BH4|1|2|A|1333
8BH4|1|2|G|1334
8BH4|1|2|U|1335
8BH4|1|2|C|1336
8BH4|1|2|G|1337

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13