J3_8BHJ_001

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8BHJ|1|0|U|686, 8BHJ|1|0|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHJ_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1218

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8BHJ|1|0|U|683
8BHJ|1|0|G|684
8BHJ|1|0|A|685
8BHJ|1|0|U|686
8BHJ|1|0|C|687
8BHJ|1|0|U|688
8BHJ|1|0|A|689
*
8BHJ|1|0|U|773
8BHJ|1|0|G|774
8BHJ|1|0|G|775
*
8BHJ|1|0|C|791
8BHJ|1|0|A|792
8BHJ|1|0|A|793
8BHJ|1|0|A|794

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain c

50S ribosomal protein L34