J3_8BHJ_004

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8BHJ|1|0|C|1607, 8BHJ|1|0|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHJ_004 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.2454

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8BHJ|1|0|C|1306
8BHJ|1|0|A|1307
8BHJ|1|0|A|1308
8BHJ|1|0|G|1309
*
8BHJ|1|0|C|1605
8BHJ|1|0|C|1606
8BHJ|1|0|C|1607
8BHJ|1|0|A|1608
8BHJ|1|0|A|1609
8BHJ|1|0|A|1610
8BHJ|1|0|C|1611
*
8BHJ|1|0|G|1620
8BHJ|1|0|U|1621
8BHJ|1|0|G|1622

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34