3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
GUGGA*UAC*GGAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BHJ|1|2|G|942
8BHJ|1|2|U|943
8BHJ|1|2|G|944
8BHJ|1|2|G|945
8BHJ|1|2|A|946
*
8BHJ|1|2|U|1235
8BHJ|1|2|A|1236
8BHJ|1|2|C|1237
*
8BHJ|1|2|G|1337
8BHJ|1|2|G|1338
8BHJ|1|2|A|1339
8BHJ|1|2|A|1340
8BHJ|1|2|U|1341

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain 4
Transfer RNA; tRNA
Chain m
30S ribosomal protein S9
Chain q
30S ribosomal protein S13

Coloring options:

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