J3_8BHJ_011

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GUGGA*UAC*GGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHJ|1|2|G|942
8BHJ|1|2|U|943
8BHJ|1|2|G|944
8BHJ|1|2|G|945
8BHJ|1|2|A|946
*
8BHJ|1|2|U|1235
8BHJ|1|2|A|1236
8BHJ|1|2|C|1237
*
8BHJ|1|2|G|1337
8BHJ|1|2|G|1338
8BHJ|1|2|A|1339
8BHJ|1|2|A|1340
8BHJ|1|2|U|1341

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain m

30S ribosomal protein S9

Chain q

30S ribosomal protein S13