3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
8BHJ|1|2|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BHJ_015 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1881
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8BHJ|1|2|U|1116
8BHJ|1|2|A|1117
8BHJ|1|2|U|1118
*
8BHJ|1|2|A|1155
8BHJ|1|2|G|1156
8BHJ|1|2|A|1157
8BHJ|1|2|C|1158
8BHJ|1|2|U|1159
8BHJ|1|2|G|1160
8BHJ|1|2|C|1161
*
8BHJ|1|2|G|1175
8BHJ|1|2|A|1176
8BHJ|1|2|G|1177
8BHJ|1|2|G|1178
8BHJ|1|2|A|1179
8BHJ|1|2|A|1180
8BHJ|1|2|G|1181
8BHJ|1|2|G|1182
8BHJ|1|2|U|1183
8BHJ|1|2|G|1184

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain f
30S ribosomal protein S2
Chain k
30S ribosomal protein S7
Chain m
30S ribosomal protein S9
Chain n
30S ribosomal protein S10
Chain r
30S ribosomal protein S14

Coloring options:


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