3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
CAAUG*CGUAGUCCGGAUU*AUGAAGUCG
Length
27 nucleotides
Bulged bases
8BHJ|1|2|U|1240, 8BHJ|1|2|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BHJ|1|2|C|1237
8BHJ|1|2|A|1238
8BHJ|1|2|A|1239
8BHJ|1|2|U|1240
8BHJ|1|2|G|1241
*
8BHJ|1|2|C|1296
8BHJ|1|2|G|1297
8BHJ|1|2|U|1298
8BHJ|1|2|A|1299
8BHJ|1|2|G|1300
8BHJ|1|2|U|1301
8BHJ|1|2|C|1302
8BHJ|1|2|C|1303
8BHJ|1|2|G|1304
8BHJ|1|2|G|1305
8BHJ|1|2|A|1306
8BHJ|1|2|U|1307
8BHJ|1|2|U|1308
*
8BHJ|1|2|A|1329
8BHJ|1|2|U|1330
8BHJ|1|2|G|1331
8BHJ|1|2|A|1332
8BHJ|1|2|A|1333
8BHJ|1|2|G|1334
8BHJ|1|2|U|1335
8BHJ|1|2|C|1336
8BHJ|1|2|G|1337

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain k
30S ribosomal protein S7
Chain q
30S ribosomal protein S13

Coloring options:

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