J3_8BHJ_016

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUU*AUGAAGUCG

Length

27 nucleotides

Bulged bases

8BHJ|1|2|U|1240, 8BHJ|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHJ|1|2|C|1237
8BHJ|1|2|A|1238
8BHJ|1|2|A|1239
8BHJ|1|2|U|1240
8BHJ|1|2|G|1241
*
8BHJ|1|2|C|1296
8BHJ|1|2|G|1297
8BHJ|1|2|U|1298
8BHJ|1|2|A|1299
8BHJ|1|2|G|1300
8BHJ|1|2|U|1301
8BHJ|1|2|C|1302
8BHJ|1|2|C|1303
8BHJ|1|2|G|1304
8BHJ|1|2|G|1305
8BHJ|1|2|A|1306
8BHJ|1|2|U|1307
8BHJ|1|2|U|1308
*
8BHJ|1|2|A|1329
8BHJ|1|2|U|1330
8BHJ|1|2|G|1331
8BHJ|1|2|A|1332
8BHJ|1|2|A|1333
8BHJ|1|2|G|1334
8BHJ|1|2|U|1335
8BHJ|1|2|C|1336
8BHJ|1|2|G|1337

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13