J3_8BHJ_021

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8BHJ|1|0|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHJ_021 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1111

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BHJ|1|0|G|297
8BHJ|1|0|G|298
8BHJ|1|0|A|299
8BHJ|1|0|A|300
8BHJ|1|0|G|301
*
8BHJ|1|0|C|316
8BHJ|1|0|G|317
8BHJ|1|0|C|318
8BHJ|1|0|G|319
8BHJ|1|0|A|320
8BHJ|1|0|U|321
8BHJ|1|0|A|322
8BHJ|1|0|C|323
8BHJ|1|0|A|324
8BHJ|1|0|G|325
*
8BHJ|1|0|C|337
8BHJ|1|0|G|338
8BHJ|1|0|U|339
8BHJ|1|0|A|340
8BHJ|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24