J3_8BHJ_031
3D structure
- PDB id
- 8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- CGGUU*AGCUUGA*UGACG
- Length
- 17 nucleotides
- Bulged bases
- 8BHJ|1|2|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHJ_031 not in the Motif Atlas
- Homologous match to J3_6CZR_060
- Geometric discrepancy: 0.2037
- The information below is about J3_6CZR_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_72319.1
- Basepair signature
- cWW-F-F-F-F-tWH-F-F-cWW-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8BHJ|1|2|C|586
8BHJ|1|2|G|587
8BHJ|1|2|G|588
8BHJ|1|2|U|589
8BHJ|1|2|U|590
*
8BHJ|1|2|A|649
8BHJ|1|2|G|650
8BHJ|1|2|C|651
8BHJ|1|2|U|652
8BHJ|1|2|U|653
8BHJ|1|2|G|654
8BHJ|1|2|A|655
*
8BHJ|1|2|U|751
8BHJ|1|2|G|752
8BHJ|1|2|A|753
8BHJ|1|2|C|754
8BHJ|1|2|G|755
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain l
- 30S ribosomal protein S8
- Chain p
- 30S ribosomal protein S12
- Chain s
- 30S ribosomal protein S15
- Chain u
- 30S ribosomal protein S17
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