3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
CGGUU*AGCUUGA*UGACG
Length
17 nucleotides
Bulged bases
8BHJ|1|2|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BHJ_031 not in the Motif Atlas
Homologous match to J3_6CZR_060
Geometric discrepancy: 0.2037
The information below is about J3_6CZR_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_72319.1
Basepair signature
cWW-F-F-F-F-tWH-F-F-cWW-cWW-cWW-F
Number of instances in this motif group
1

Unit IDs

8BHJ|1|2|C|586
8BHJ|1|2|G|587
8BHJ|1|2|G|588
8BHJ|1|2|U|589
8BHJ|1|2|U|590
*
8BHJ|1|2|A|649
8BHJ|1|2|G|650
8BHJ|1|2|C|651
8BHJ|1|2|U|652
8BHJ|1|2|U|653
8BHJ|1|2|G|654
8BHJ|1|2|A|655
*
8BHJ|1|2|U|751
8BHJ|1|2|G|752
8BHJ|1|2|A|753
8BHJ|1|2|C|754
8BHJ|1|2|G|755

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain l
30S ribosomal protein S8
Chain p
30S ribosomal protein S12
Chain s
30S ribosomal protein S15
Chain u
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0867 s