J3_8BHL_021

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8BHL|1|0|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHL_021 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1085

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BHL|1|0|G|297
8BHL|1|0|G|298
8BHL|1|0|A|299
8BHL|1|0|A|300
8BHL|1|0|G|301
*
8BHL|1|0|C|316
8BHL|1|0|G|317
8BHL|1|0|C|318
8BHL|1|0|G|319
8BHL|1|0|A|320
8BHL|1|0|U|321
8BHL|1|0|A|322
8BHL|1|0|C|323
8BHL|1|0|A|324
8BHL|1|0|G|325
*
8BHL|1|0|C|337
8BHL|1|0|G|338
8BHL|1|0|U|339
8BHL|1|0|A|340
8BHL|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24