3D structure

PDB id
8BHN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.85 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
8BHN|1|0|U|686, 8BHN|1|0|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BHN_001 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.1118
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8BHN|1|0|U|683
8BHN|1|0|G|684
8BHN|1|0|A|685
8BHN|1|0|U|686
8BHN|1|0|C|687
8BHN|1|0|U|688
8BHN|1|0|A|689
*
8BHN|1|0|U|773
8BHN|1|0|G|774
8BHN|1|0|G|775
*
8BHN|1|0|C|791
8BHN|1|0|A|792
8BHN|1|0|A|793
8BHN|1|0|A|794

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain A
50S ribosomal protein L2
Chain c
50S ribosomal protein L34

Coloring options:


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