J3_8BHN_035

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUUG*CAUGAAGUCG

Length

29 nucleotides

Bulged bases

8BHN|1|2|U|1240, 8BHN|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHN|1|2|C|1237
8BHN|1|2|A|1238
8BHN|1|2|A|1239
8BHN|1|2|U|1240
8BHN|1|2|G|1241
*
8BHN|1|2|C|1296
8BHN|1|2|G|1297
8BHN|1|2|U|1298
8BHN|1|2|A|1299
8BHN|1|2|G|1300
8BHN|1|2|U|1301
8BHN|1|2|C|1302
8BHN|1|2|C|1303
8BHN|1|2|G|1304
8BHN|1|2|G|1305
8BHN|1|2|A|1306
8BHN|1|2|U|1307
8BHN|1|2|U|1308
8BHN|1|2|G|1309
*
8BHN|1|2|C|1328
8BHN|1|2|A|1329
8BHN|1|2|U|1330
8BHN|1|2|G|1331
8BHN|1|2|A|1332
8BHN|1|2|A|1333
8BHN|1|2|G|1334
8BHN|1|2|U|1335
8BHN|1|2|C|1336
8BHN|1|2|G|1337

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13