J3_8BHP_007

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8BHP|1|0|A|2518, 8BHP|1|0|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHP_007 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.169

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8BHP|1|0|C|2517
8BHP|1|0|A|2518
8BHP|1|0|U|2519
8BHP|1|0|C|2520
*
8BHP|1|0|G|2545
8BHP|1|0|U|2546
8BHP|1|0|A|2547
*
8BHP|1|0|U|2561
8BHP|1|0|U|2562
8BHP|1|0|U|2563
8BHP|1|0|A|2564
8BHP|1|0|A|2565
8BHP|1|0|A|2566
8BHP|1|0|G|2567

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain H

50S ribosomal protein L14