J3_8BHP_022

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8BHP|1|0|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHP_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1108

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BHP|1|0|G|297
8BHP|1|0|G|298
8BHP|1|0|A|299
8BHP|1|0|A|300
8BHP|1|0|G|301
*
8BHP|1|0|C|316
8BHP|1|0|G|317
8BHP|1|0|C|318
8BHP|1|0|G|319
8BHP|1|0|A|320
8BHP|1|0|U|321
8BHP|1|0|A|322
8BHP|1|0|C|323
8BHP|1|0|A|324
8BHP|1|0|G|325
*
8BHP|1|0|C|337
8BHP|1|0|G|338
8BHP|1|0|U|339
8BHP|1|0|A|340
8BHP|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24