3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
8BHP|1|0|A|2388, 8BHP|1|0|U|2390, 8BHP|1|0|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BHP_025 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.1401
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8BHP|1|0|G|2282
8BHP|1|0|C|2283
8BHP|1|0|A|2284
*
8BHP|1|0|U|2384
8BHP|1|0|C|2385
8BHP|1|0|A|2386
8BHP|1|0|U|2387
8BHP|1|0|A|2388
8BHP|1|0|G|2389
8BHP|1|0|U|2390
8BHP|1|0|G|2391
8BHP|1|0|A|2392
8BHP|1|0|U|2393
8BHP|1|0|C|2394
8BHP|1|0|C|2395
*
8BHP|1|0|G|2421
8BHP|1|0|C|2422
8BHP|1|0|U|2423
8BHP|1|0|C|2424
8BHP|1|0|A|2425
8BHP|1|0|A|2426
8BHP|1|0|C|2427

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain I
50S ribosomal protein L15
Chain T
50S ribosomal protein L27
Chain b
50S ribosomal protein L33
Chain d
50S ribosomal protein L35

Coloring options:


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