J3_8BHP_030

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

8BHP|1|2|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHP_030 not in the Motif Atlas

Geometric match to J3_4LFB_011

Geometric discrepancy: 0.1142

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8BHP|1|2|C|586
8BHP|1|2|G|587
8BHP|1|2|G|588
*
8BHP|1|2|C|651
8BHP|1|2|U|652
8BHP|1|2|U|653
8BHP|1|2|G|654
*
8BHP|1|2|C|754
8BHP|1|2|G|755

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain l

30S ribosomal protein S8

Chain p

30S ribosomal protein S12

Chain s

30S ribosomal protein S15

Chain u

30S ribosomal protein S17