J3_8BHP_036

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHP_036 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1765

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BHP|1|2|U|1073
8BHP|1|2|G|1074
*
8BHP|1|2|U|1083
8BHP|1|2|G|1084
8BHP|1|2|U|1085
8BHP|1|2|U|1086
8BHP|1|2|G|1087
*
8BHP|1|2|C|1098
8BHP|1|2|G|1099
8BHP|1|2|C|1100
8BHP|1|2|A|1101
8BHP|1|2|A|1102

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain i

30S ribosomal protein S5

Chain y

30S ribosomal protein S21