J3_8BIM_001

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8BIM|1|0|U|686, 8BIM|1|0|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1006

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|U|683
8BIM|1|0|G|684
8BIM|1|0|A|685
8BIM|1|0|U|686
8BIM|1|0|C|687
8BIM|1|0|U|688
8BIM|1|0|A|689
*
8BIM|1|0|U|773
8BIM|1|0|G|774
8BIM|1|0|G|775
*
8BIM|1|0|C|791
8BIM|1|0|A|792
8BIM|1|0|A|793
8BIM|1|0|A|794

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain c

50S ribosomal protein L34