J3_8BIM_016

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUU*AUGAAGUCG

Length

27 nucleotides

Bulged bases

8BIM|1|2|U|1240, 8BIM|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BIM|1|2|C|1237
8BIM|1|2|A|1238
8BIM|1|2|A|1239
8BIM|1|2|U|1240
8BIM|1|2|G|1241
*
8BIM|1|2|C|1296
8BIM|1|2|G|1297
8BIM|1|2|U|1298
8BIM|1|2|A|1299
8BIM|1|2|G|1300
8BIM|1|2|U|1301
8BIM|1|2|C|1302
8BIM|1|2|C|1303
8BIM|1|2|G|1304
8BIM|1|2|G|1305
8BIM|1|2|A|1306
8BIM|1|2|U|1307
8BIM|1|2|U|1308
*
8BIM|1|2|A|1329
8BIM|1|2|U|1330
8BIM|1|2|G|1331
8BIM|1|2|A|1332
8BIM|1|2|A|1333
8BIM|1|2|G|1334
8BIM|1|2|U|1335
8BIM|1|2|C|1336
8BIM|1|2|G|1337

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13