J3_8BIM_017

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_017 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.1173

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|G|30
8BIM|1|0|C|31
*
8BIM|1|0|G|474
8BIM|1|0|C|475
8BIM|1|0|G|476
8BIM|1|0|A|477
8BIM|1|0|A|478
8BIM|1|0|A|479
8BIM|1|0|A|480
8BIM|1|0|G|481
*
8BIM|1|0|C|509
8BIM|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain R

50S ribosomal protein L24