J3_8BIM_020

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

8BIM|1|0|U|72, 8BIM|1|0|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_020 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1191

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|A|56
8BIM|1|0|C|57
*
8BIM|1|0|G|70
8BIM|1|0|A|71
8BIM|1|0|U|72
8BIM|1|0|A|73
8BIM|1|0|A|74
8BIM|1|0|G|75
8BIM|1|0|C|76
*
8BIM|1|0|G|110
8BIM|1|0|A|111
8BIM|1|0|U|112
8BIM|1|0|U|113
8BIM|1|0|U|114

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain V

50S ribosomal protein L29

Chain c

50S ribosomal protein L34