J3_8BIM_035

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_035 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1696

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BIM|1|2|U|1073
8BIM|1|2|G|1074
*
8BIM|1|2|U|1083
8BIM|1|2|G|1084
8BIM|1|2|U|1085
8BIM|1|2|U|1086
8BIM|1|2|G|1087
*
8BIM|1|2|C|1098
8BIM|1|2|G|1099
8BIM|1|2|C|1100
8BIM|1|2|A|1101
8BIM|1|2|A|1102

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain i

30S ribosomal protein S5

Chain y

30S ribosomal protein S21