J3_8BJQ_006
3D structure
- PDB id
- 8BJQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8BJQ|1|1|A|1065, 8BJQ|1|1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BJQ_006 not in the Motif Atlas
- Homologous match to J3_5TBW_006
- Geometric discrepancy: 0.1342
- The information below is about J3_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BJQ|1|1|U|986
8BJQ|1|1|U|987
*
8BJQ|1|1|A|1062
8BJQ|1|1|G|1063
8BJQ|1|1|A|1064
8BJQ|1|1|A|1065
8BJQ|1|1|G|1066
*
8BJQ|1|1|C|1092
8BJQ|1|1|A|1093
8BJQ|1|1|U|1094
8BJQ|1|1|U|1095
8BJQ|1|1|U|1096
8BJQ|1|1|G|1097
8BJQ|1|1|A|1098
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7-A
- Chain LT
- 60S ribosomal protein L21-A
- Chain Lb
- 60S ribosomal protein L29
Coloring options: