J3_8BJQ_018
3D structure
- PDB id
- 8BJQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 8BJQ|1|1|U|117, 8BJQ|1|1|G|120, 8BJQ|1|1|A|121, 8BJQ|1|1|U|147, 8BJQ|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BJQ|1|1|C|113
8BJQ|1|1|A|114
8BJQ|1|1|A|115
8BJQ|1|1|A|116
8BJQ|1|1|U|117
8BJQ|1|1|U|118
8BJQ|1|1|U|119
8BJQ|1|1|G|120
8BJQ|1|1|A|121
8BJQ|1|1|A|122
8BJQ|1|1|A|123
8BJQ|1|1|U|124
*
8BJQ|1|1|A|144
8BJQ|1|1|G|145
8BJQ|1|1|U|146
8BJQ|1|1|U|147
8BJQ|1|1|G|148
8BJQ|1|1|U|149
8BJQ|1|1|A|150
8BJQ|1|1|A|151
8BJQ|1|1|U|152
8BJQ|1|1|U|153
8BJQ|1|1|U|154
8BJQ|1|1|G|155
8BJQ|1|1|G|156
8BJQ|1|1|A|157
8BJQ|1|1|G|158
*
8BJQ|1|1|C|263
8BJQ|1|1|G|264
8BJQ|1|1|A|265
8BJQ|1|1|A|266
8BJQ|1|1|G|267
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LG
- 60S ribosomal protein L8-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Li
- 60S ribosomal protein L36-A
Coloring options: