J3_8BJQ_025

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GAAC*GUAAAAG

Length

14 nucleotides

Bulged bases

8BJQ|1|1|A|2703, 8BJQ|1|1|A|2705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BJQ|1|1|C|2664
8BJQ|1|1|U|2665
8BJQ|1|1|C|2666
*
8BJQ|1|1|G|2690
8BJQ|1|1|A|2691
8BJQ|1|1|A|2692
8BJQ|1|1|C|2693
*
8BJQ|1|1|G|2700
8BJQ|1|1|U|2701
8BJQ|1|1|A|2702
8BJQ|1|1|A|2703
8BJQ|1|1|A|2704
8BJQ|1|1|A|2705
8BJQ|1|1|G|2706

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LJ

60S ribosomal protein L11-B

Chain LT

60S ribosomal protein L21-A