3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AGCU*ACGUUCUAGCAUUCAAG*UGAU
Length
25 nucleotides
Bulged bases
8BN3|1|1|G|2549, 8BN3|1|1|U|2550, 8BN3|1|1|U|2551, 8BN3|1|1|A|2554, 8BN3|1|1|U|2558, 8BN3|1|1|U|2559, 8BN3|1|1|C|2560
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BN3_007 not in the Motif Atlas
Homologous match to J3_8C3A_009
Geometric discrepancy: 0.1346
The information below is about J3_8C3A_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_02167.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
Number of instances in this motif group
1

Unit IDs

8BN3|1|1|A|2529
8BN3|1|1|G|2530
8BN3|1|1|C|2531
8BN3|1|1|U|2532
*
8BN3|1|1|A|2547
8BN3|1|1|C|2548
8BN3|1|1|G|2549
8BN3|1|1|U|2550
8BN3|1|1|U|2551
8BN3|1|1|C|2552
8BN3|1|1|U|2553
8BN3|1|1|A|2554
8BN3|1|1|G|2555
8BN3|1|1|C|2556
8BN3|1|1|A|2557
8BN3|1|1|U|2558
8BN3|1|1|U|2559
8BN3|1|1|C|2560
8BN3|1|1|A|2561
8BN3|1|1|A|2562
8BN3|1|1|G|2563
*
8BN3|1|1|U|2578
8BN3|1|1|G|2579
8BN3|1|1|A|2580
8BN3|1|1|U|2581

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L2
60S ribosomal protein L2-A
Chain L8
60S ribosomal protein L8-A
Chain N5
60S ribosomal protein L25
Chain N7
60S ribosomal protein L27-A
Chain O0
60S ribosomal protein L30
Chain O4
Large ribosomal subunit protein eL34A
Chain Q3
60S ribosomal protein L43-A
Chain S1
Small ribosomal subunit protein eS1

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