J3_8BN3_007
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8BN3|1|1|G|2549, 8BN3|1|1|U|2550, 8BN3|1|1|U|2551, 8BN3|1|1|A|2554, 8BN3|1|1|U|2558, 8BN3|1|1|U|2559, 8BN3|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_007 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1346
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BN3|1|1|A|2529
8BN3|1|1|G|2530
8BN3|1|1|C|2531
8BN3|1|1|U|2532
*
8BN3|1|1|A|2547
8BN3|1|1|C|2548
8BN3|1|1|G|2549
8BN3|1|1|U|2550
8BN3|1|1|U|2551
8BN3|1|1|C|2552
8BN3|1|1|U|2553
8BN3|1|1|A|2554
8BN3|1|1|G|2555
8BN3|1|1|C|2556
8BN3|1|1|A|2557
8BN3|1|1|U|2558
8BN3|1|1|U|2559
8BN3|1|1|C|2560
8BN3|1|1|A|2561
8BN3|1|1|A|2562
8BN3|1|1|G|2563
*
8BN3|1|1|U|2578
8BN3|1|1|G|2579
8BN3|1|1|A|2580
8BN3|1|1|U|2581
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain L8
- 60S ribosomal protein L8-A
- Chain N5
- 60S ribosomal protein L25
- Chain N7
- 60S ribosomal protein L27-A
- Chain O0
- 60S ribosomal protein L30
- Chain O4
- Large ribosomal subunit protein eL34A
- Chain Q3
- 60S ribosomal protein L43-A
- Chain S1
- Small ribosomal subunit protein eS1
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