J3_8BN3_012
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8BN3|1|2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_012 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0685
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BN3|1|2|A|881
8BN3|1|2|U|882
8BN3|1|2|C|883
8BN3|1|2|A|884
*
8BN3|1|2|U|928
8BN3|1|2|A|929
8BN3|1|2|A|930
8BN3|1|2|C|931
8BN3|1|2|U|932
8BN3|1|2|A|933
8BN3|1|2|C|934
8BN3|1|2|U|935
8BN3|1|2|G|936
*
8BN3|1|2|C|943
8BN3|1|2|A|944
8BN3|1|2|U|945
8BN3|1|2|U|946
8BN3|1|2|U|947
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain C4
- 40S ribosomal protein S14-B
- Chain D6
- RPS26B isoform 1
- Chain Q3
- 60S ribosomal protein L43-A
- Chain S1
- Small ribosomal subunit protein eS1
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