J3_8BPO_002
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUCC*GCCGG*CCACGCGUCCCCCGCGAG
- Length
- 28 nucleotides
- Bulged bases
- 8BPO|1|A1|C|1237, 8BPO|1|A1|C|1252, 8BPO|1|A1|G|1271, 8BPO|1|A1|C|1272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|U|980
8BPO|1|A1|C|981
8BPO|1|A1|U|982
8BPO|1|A1|C|983
8BPO|1|A1|C|984
*
8BPO|1|A1|G|1070
8BPO|1|A1|C|1071
8BPO|1|A1|C|1072
8BPO|1|A1|G|1073
8BPO|1|A1|G|1074
*
8BPO|1|A1|C|1236
8BPO|1|A1|C|1237
8BPO|1|A1|A|1238
8BPO|1|A1|C|1239
8BPO|1|A1|G|1244
8BPO|1|A1|C|1245
8BPO|1|A1|G|1246
8BPO|1|A1|U|1247
8BPO|1|A1|C|1248
8BPO|1|A1|C|1249
8BPO|1|A1|C|1250
8BPO|1|A1|C|1251
8BPO|1|A1|C|1252
8BPO|1|A1|G|1271
8BPO|1|A1|C|1272
8BPO|1|A1|G|1273
8BPO|1|A1|A|1274
8BPO|1|A1|G|1275
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain E2
- 60S ribosomal protein L6
- Chain F2
- 60S ribosomal protein L7
- Chain a2
- 60S ribosomal protein L29
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