J3_8BPO_008

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|C|3937
8BPO|1|A1|G|3938
8BPO|1|A1|G|3939
*
8BPO|1|A1|C|4074
8BPO|1|A1|U|4075
8BPO|1|A1|G|4076
8BPO|1|A1|A|4077
8BPO|1|A1|C|4078
*
8BPO|1|A1|G|4168
8BPO|1|A1|G|4169
8BPO|1|A1|A|4170
8BPO|1|A1|C|4171
8BPO|1|A1|A|4172
8BPO|1|A1|G|4173

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein L8

Chain G2

60S ribosomal protein L7a

Chain M2

Ribosomal protein L15