J3_8BPO_009
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8BPO|1|A1|C|4116, 8BPO|1|A1|U|4117, 8BPO|1|A1|U|4118, 8BPO|1|A1|C|4119, 8BPO|1|A1|U|4120, 8BPO|1|A1|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BPO_009 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2275
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BPO|1|A1|G|4091
8BPO|1|A1|G|4092
8BPO|1|A1|G|4093
8BPO|1|A1|G|4094
*
8BPO|1|A1|C|4114
8BPO|1|A1|G|4115
8BPO|1|A1|C|4116
8BPO|1|A1|U|4117
8BPO|1|A1|U|4118
8BPO|1|A1|C|4119
8BPO|1|A1|U|4120
8BPO|1|A1|G|4121
8BPO|1|A1|G|4122
8BPO|1|A1|C|4123
8BPO|1|A1|G|4124
8BPO|1|A1|C|4125
8BPO|1|A1|C|4126
8BPO|1|A1|A|4127
8BPO|1|A1|A|4128
8BPO|1|A1|G|4129
*
8BPO|1|A1|C|4155
8BPO|1|A1|G|4156
8BPO|1|A1|A|4157
8BPO|1|A1|C|4158
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
- Chain G2
- 60S ribosomal protein L7a
- Chain W2
- Ribosomal_L23eN domain-containing protein
- Chain Y2
- 60S ribosomal protein L27
- Chain b2
- 60S ribosomal protein L30
- Chain f2
- 60S ribosomal protein L34
- Chain o2
- 60S ribosomal protein L37a
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