J3_8BPO_012

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8BPO|1|A1|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|C|4970
8BPO|1|A1|A|4971
8BPO|1|A1|U|4972
*
8BPO|1|A1|G|4986
8BPO|1|A1|C|4987
8BPO|1|A1|U|4988
8BPO|1|A1|U|4989
8BPO|1|A1|C|4990
8BPO|1|A1|U|4991
*
8BPO|1|A1|A|5060
8BPO|1|A1|A|5061
8BPO|1|A1|G|5062
8BPO|1|A1|G|5063

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain O2

60S ribosomal protein L17

Chain c2

60S ribosomal protein L31