J3_8BPO_013

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8BPO|1|A1|C|216, 8BPO|1|A1|C|217, 8BPO|1|A1|A|218, 8BPO|1|A1|G|219, 8BPO|1|A1|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|C|196
8BPO|1|A1|A|197
8BPO|1|A1|A|198
8BPO|1|A1|G|199
*
8BPO|1|A1|C|215
8BPO|1|A1|C|216
8BPO|1|A1|C|217
8BPO|1|A1|A|218
8BPO|1|A1|G|219
8BPO|1|A1|C|220
8BPO|1|A1|C|221
8BPO|1|A1|C|222
8BPO|1|A1|G|223
8BPO|1|A1|U|224
8BPO|1|A1|G|225
8BPO|1|A1|G|226
8BPO|1|A1|A|227
8BPO|1|A1|C|228
*
8BPO|1|A1|G|240
8BPO|1|A1|G|241
8BPO|1|A1|U|242
8BPO|1|A1|A|243
8BPO|1|A1|G|244

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain C2

60S ribosomal protein L4

Chain X2

Ribosomal protein L26