J3_8BPO_014
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8BPO|1|A1|U|354, 8BPO|1|A1|A|362, 8BPO|1|C1|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BPO_014 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0622
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8BPO|1|A1|C|351
8BPO|1|A1|G|352
8BPO|1|A1|A|353
8BPO|1|A1|U|354
8BPO|1|A1|A|355
8BPO|1|A1|G|356
8BPO|1|A1|U|357
8BPO|1|A1|C|358
8BPO|1|A1|A|359
8BPO|1|A1|A|360
8BPO|1|A1|C|361
8BPO|1|A1|A|362
8BPO|1|A1|A|363
8BPO|1|A1|G|364
8BPO|1|A1|U|365
8BPO|1|A1|A|366
8BPO|1|A1|C|367
*
8BPO|1|A1|G|374
8BPO|1|A1|G|375
8BPO|1|A1|A|376
8BPO|1|A1|A|377
8BPO|1|A1|A|378
8BPO|1|A1|G|379
*
8BPO|1|C1|C|21
8BPO|1|C1|U|22
8BPO|1|C1|C|23
8BPO|1|C1|G|24
Current chains
- Chain A1
- 28S ribosomal RNA
- Chain C1
- 5.8S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain X2
- Ribosomal protein L26
- Chain i2
- Ribosomal protein L37
- Chain k2
- 60S ribosomal protein L39-like
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