J3_8BPO_017
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGUC*GUGCG*CGAUG
- Length
- 15 nucleotides
- Bulged bases
- 8BPO|1|A1|C|704, 8BPO|1|A1|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|C|451
8BPO|1|A1|A|452
8BPO|1|A1|G|453
8BPO|1|A1|U|454
8BPO|1|A1|C|455
*
8BPO|1|A1|G|701
8BPO|1|A1|U|702
8BPO|1|A1|G|703
8BPO|1|A1|C|704
8BPO|1|A1|G|705
*
8BPO|1|A1|C|1292
8BPO|1|A1|G|1293
8BPO|1|A1|A|1294
8BPO|1|A1|U|1295
8BPO|1|A1|G|1296
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain E2
- 60S ribosomal protein L6
- Chain d2
- Ribosomal protein L32
- Chain e2
- 60S ribosomal protein L35a
- Chain p2
- 60S ribosomal protein L28
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