Loop J3_8BPO

3D structure

PDB id: 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Loop

Sequence: UAUAGACAGCAGGAUG*CGCUAAGGAGUGU*ACUCACCUGCCGAA
Length: 43 nucleotides
Bulged bases: 8BPO|1|A1|A|1960, 8BPO|1|A1|U|1971, 8BPO|1|A1|A|2002
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8BPO|1|A1|U|1957
8BPO|1|A1|A|1958
8BPO|1|A1|U|1959
8BPO|1|A1|A|1960
8BPO|1|A1|G|1961
8BPO|1|A1|A|1962
8BPO|1|A1|C|1963
8BPO|1|A1|A|1964
8BPO|1|A1|G|1965
8BPO|1|A1|C|1966
8BPO|1|A1|A|1967
8BPO|1|A1|G|1968
8BPO|1|A1|G|1969
8BPO|1|A1|A|1970
8BPO|1|A1|U|1971
8BPO|1|A1|G|1972
*
8BPO|1|A1|C|1994
8BPO|1|A1|G|1995
8BPO|1|A1|C|1996
8BPO|1|A1|U|1997
8BPO|1|A1|A|1998
8BPO|1|A1|A|1999
8BPO|1|A1|G|2000
8BPO|1|A1|G|2001
8BPO|1|A1|A|2002
8BPO|1|A1|G|2003
8BPO|1|A1|U|2004
8BPO|1|A1|G|2005
8BPO|1|A1|U|2006
*
8BPO|1|A1|A|2013
8BPO|1|A1|C|2014
8BPO|1|A1|U|2015
8BPO|1|A1|C|2016
8BPO|1|A1|A|2017
8BPO|1|A1|C|2018
8BPO|1|A1|C|2019
8BPO|1|A1|U|2020
8BPO|1|A1|G|2021
8BPO|1|A1|C|2022
8BPO|1|A1|C|2023
8BPO|1|A1|G|2024
8BPO|1|A1|A|2025
8BPO|1|A1|A|2026

Current chains

Chain A1: 28S ribosomal RNA

Nearby chains

Chain l2: Ubiquitin-60S ribosomal protein L40
Chain q2: 60S acidic ribosomal protein P0
Chain r2: 60S ribosomal protein L12

J3_8BPO_019